Algorithms in Structural Bioinformatics - Mathematical and Computational methods for structured RNAs

Week Sun. 13 Mon. 14 Tue. 15 Wed. 16 Thu. 17 Fri. 18 List

	Sun. 13	Mon. 14	Tue. 15	Wed. 16	Thu. 17	Fri. 18
09:00 10:00 11:00 12:00 13:00 14:00 15:00 16:00 17:00 18:00 19:00 20:00	Welcome and introduction 18:00 - 20:00 (2h) Welcome and introduction Get to know the lecturers and fellow students “Bring your own Chocolate” evening	Intro: Biology of RNA 2D structures 9:00 - 9:15 (15min) Intro: Biology of RNA 2D structures Andrea Tanzer RNA 2D structures 9:15 - 10:30 (1h15) RNA 2D structures Ivo Hofacker RNA 2D structures 11:00 - 12:30 (1h30) RNA 2D structures Ronny Lorenz 2D structures 14:00 - 15:30 (1h30) 2D structures Ivo Hofacker 2D structures 16:00 - 17:30 (1h30) 2D structures Ronny Lorenz	Intro: Biology of RNA folding kinetics 9:00 - 9:15 (15min) Intro: Biology of RNA folding kinetics Andrea Tanzer RNA folding kinetics 9:15 - 10:30 (1h15) RNA folding kinetics Ronny Lorenz Conformational sampling and energy landscapes 11:00 - 12:30 (1h30) Conformational sampling and energy landscapes Cazals/Cortes/Robert Kinetics 14:00 - 15:30 (1h30) Kinetics Ronny Lorenz Conformational sampling and energy landscapes 16:00 - 17:30 (1h30) Conformational sampling and energy landscapes Cazals/Cortes/Robert/Ponty	RNA design 9:00 - 10:30 (1h30) RNA design Sven Findeiss RNA design 11:00 - 12:30 (1h30) RNA design Sven Findeiss Group activity 14:00 - 17:30 (3h30) Group activity	Into: Comparative Genomics 9:00 - 9:15 (15min) Into: Comparative Genomics Andrea Tanzer Sequence-structure alignments 9:15 - 10:30 (1h15) Sequence-structure alignments Sebastian Will Clustering RNA structures 11:00 - 12:30 (1h30) Clustering RNA structures Sebastian Will Comparative genomics 14:00 - 15:30 (1h30) Comparative genomics Sebastian Will Comparative genomics 16:00 - 17:30 (1h30) Comparative genomics Sebastian Will	Intro: 3D structure and interactions 9:00 - 9:15 (15min) Intro: 3D structure and interactions Andrea Tanzer 3D structure modelling 9:15 - 10:30 (1h15) 3D structure modelling Samuela Pasquali 3D modelling 11:00 - 12:30 (1h30) 3D modelling Samuela Pasquali Coarse-grain RNA-protein interactions 14:00 - 15:30 (1h30) Coarse-grain RNA-protein interactions Isaure de Beauchene RNA-protein interactions 16:00 - 17:30 (1h30) RNA-protein interactions Isaure de Beauchene